All the tools you need to analyse your miRNAs


Sequencing Analysis Known miRNA Identification IsomiRs Identification

A command-line bioinformatic tool usefull for the analysis of deep sequencing data, namely known miRNAs and isomiRs annotation.

Homepage: Link

Last Software Update: Feb. 3, 2016
Publication Date: Dec. 11, 2009
Citations: 106 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPLv2
    Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • isomiRs identyfication

  • Sequencing Platform Specific: Illumina
    PARE/CLIP-Seq: /
    Known miRNA Identification
    NGS Data Needed:
    IsomiRs Identification
    NGS Data Needed:

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