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isomiRs Identification
13
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45
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20
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50
Target Functional Analysis
21
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6
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*
are required! If submitted tool falls in few categories, please fill all appropriate sections.
Name
*
Category
*
Hold down "Control", or "Command" on a Mac, to select more than one.
Target Prediction
Novel miRNA/Precursor Prediction
miRNA Databases
Sequencing Analysis
Other Tools
Target Functional Analysis
Differential Expression Analysis
Known miRNA Identification
All in 1 Tools
IsomiRs Identification
miRNA-SNP Analysis
Description
*
Homepage (URL Address)
*
Online
*
No
Yes
Local
*
No
Yes
Precomputed Target Results Available For Download
*
No
Yes
Installation/User Level
*
Easy
Intermediate
Advanced
Input Data Required
Please separate input data by comma
Algorithm
Target Predictions Needed
*
No
Yes
Reference Genome Needed
*
Organism Specific
*
Invertebrates
Bacteria
Plants
Vertebrates
Viruses
Animals
Mouse
Fish
Worm
Rat
Fly
Human
Chicken
Any
Performance
Meta-Server
*
No
Yes
NGS Data Needed
*
No
Yes
Cross-Refferences
Please separate cross-refferences by comma
License
Analysis Scheme (URL Address For Graphics)
Reference (URL Address)
*
User Adjustability
*
No
Yes
Target Prediction Methods Used For Metaserver
Please separate software by comma (e. g. miRanda, PITA, TargetScan)
Logo (URL Address For Graphics)
Is tools' website online?
*
No
Yes
DOI
Publication date
PubMed ID
Last software update
User Support
*
No
Yes
isomiRs Identification
NGS Data Needed
*
No
Yes
miRNA databases
Software Used For Target Prediction
Please separate software by comma (e. g. miRanda, PITA, TargetScan)
MiRNA Basic Information
*
No
Yes
Target Experimental
*
No
Yes
Target Predicted
*
No
Yes
Diseases/Pathways
*
No
Yes
Literature Mining
*
No
Yes
MiRNA-ncRNA Interaction
*
No
Yes
Target Expression
*
No
Yes
MiRNA Expression
*
No
Yes
Transcription Factor-miRNA Regulation
*
No
Yes
MiRNA-related SNP information
*
No
Yes
Sequencing Analysis
Sequencing Platform Specific
Illumina
454
SOLiD
Sanger
Any
Novel miRNA Identification
*
No
Yes
Known miRNA Identification
*
No
Yes
Target Prediction
*
No
Yes
Target Annotation
*
No
Yes
Differential Expression
Precursor Prediction
IsomiRs Identyfication
*
No
Yes
Other ncRNA identification
*
No
Yes
Target Prediction
Target Region
3'UTR
5'UTR
CDS
Any
Target Annotation
*
No
Yes
Target Enrichment Analysis
*
No
Yes
Algorithm
NGS Data Needed
*
No
Yes
Seed Match
*
No
Yes
Conservation
*
No
Yes
Free Energy
*
No
Yes
Site Accessibility
*
No
Yes
Target-site Abundance
*
No
Yes
Machine Learnign-Based
*
No
Yes
3' Compensatory Pairing
*
No
Yes
G:U Pairs Allowed In Seed
*
No
Yes
Local AU Content
*
No
Yes
Other Features
Please separate other features by comma
miRNA-SNP Analysis
Target Predictions Needed
*
No
Yes
NGS Data Needed
*
No
Yes
Target Annotation / Functional Analysis
GO terms analysis
*
No
Yes
KEGG Pathways Analysis
*
No
Yes
DO terms analysis
*
No
Yes
MiRNA/mRNA correlation analysis
*
No
Yes
Literature Mining
*
No
Yes
Algorithm
Target Predictions Needed
*
No
Yes
Protein-Protein Interaction Analysis
*
No
Yes
NGS Data Needed
*
No
Yes
Functional Similarity
*
No
Yes
Differential Expression Analysis
MiRNA differential expression
*
No
Yes
MRNA differential expression
*
No
Yes
NGS Data Needed
*
No
Yes
Algorithm
Novel miRNA/Precursor Prediction
Algorithm
NGS Data Needed
*
No
Yes
Sequence
*
No
Yes
Structure
*
No
Yes
Conservation
*
No
Yes
Novel miRNA/Precursor Analysis - Classification
*
No
Yes
Novel miRNA/Precursor Analysis - Prediction
*
No
Yes
Other Features
Please separate features by comma
Known miRNA Identification
NGS Data Needed
*
No
Yes
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