All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: Sept. 21, 2019, 12:02 a.m.
Latest Literature
  • Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection.
    Lopez-Rincon A, Martinez-Archundia M, Martinez-Ruiz GU, Schoenhuth A, Tonda A
    BMC Bioinformatics. 2019 Sep 18;20(1):480 Pubmed >>
  • Expression of Concern: miRNA 17 Family Regulates Cisplatin-Resistant and Metastasis by Targeting TGFbetaR2 in NSCLC.
    PLOS ONE Editors
    PLoS One. 2019;14(9):e0222896 Pubmed >>
  • Global analyses of the dynamics of mammalian microRNA metabolism.
    Kingston E, Bartel D
    Genome Res. 2019 Sep 13;: Pubmed >>
  • A network embedding-based multiple information integration method for the MiRNA-disease association prediction.
    Gong Y, Niu Y, Zhang W, Li X
    BMC Bioinformatics. 2019 Sep 12;20(1):468 Pubmed >>
  • Intracellular redox potential is correlated with miRNA expression in MCF7 cells under hypoxic conditions.
    Johnston H, Dickinson P, Ivens A, Buck AH, Levine RD, Remacle F, Campbell CJ
    Proc Natl Acad Sci U S A. 2019 Sep 10;: Pubmed >>
  • Digital-resolution detection of microRNA with single-base selectivity by photonic resonator absorption microscopy.
    Canady TD, Li N, Smith LD, Lu Y, Kohli M, Smith AM, Cunningham BT
    Proc Natl Acad Sci U S A. 2019 Sep 09;: Pubmed >>
  • Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
    Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Ros XB, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L
    Bioinformatics. 2019 Aug 29;: Pubmed >>
  • miRDB: an online database for prediction of functional microRNA targets.
    Chen Y, Wang X
    Nucleic Acids Res. 2019 Aug 31;: Pubmed >>
  • Scion control of miRNA abundance and tree maturity in grafted avocado.
    Ahsan MU, Hayward A, Alam M, Bandaralage JH, Topp B, Beveridge CA, Mitter N
    BMC Plant Biol. 2019 Sep 03;19(1):382 Pubmed >>
  • Serum microRNA-based prediction of responsiveness to eribulin in metastatic breast cancer.
    Satomi-Tsushita N, Shimomura A, Matsuzaki J, Yamamoto Y, Kawauchi J, Takizawa S, Aoki Y, Sakamoto H, Kato K, Shimizu C, Ochiya T, Tamura K
    PLoS One. 2019;14(9):e0222024 Pubmed >>
  • Analysis of potential roles of combinatorial microRNA regulation in occurrence of valvular heart disease with atrial fibrillation based on computational evidences.
    Wang G, Rao N, Liu D, Jiang H, Liu K, Yang F, Chen Y, Huang K
    PLoS One. 2019;14(9):e0221900 Pubmed >>
  • Modulation of all-trans retinoic acid-induced MiRNA expression in neoplastic cell lines: a systematic review.
    Lima L, de Melo TCT, Marques D, de Araújo JNG, Leite ISF, Alves CX, Genre J, Silbiger VN
    BMC Cancer. 2019 Aug 30;19(1):866 Pubmed >>
  • MicroRNA regulation in colorectal cancer tissue and serum.
    Gmerek L, Martyniak K, Horbacka K, Krokowicz P, Scierski W, Golusinski P, Golusinski W, Schneider A, Masternak MM
    PLoS One. 2019;14(8):e0222013 Pubmed >>
  • Human CAP cells represent a novel source for functional, miRNA-loaded exosome production.
    Zeh N, Schneider H, Mathias S, Raab N, Kleemann M, Schmidt-Hertel S, Weis B, Wissing S, Strempel N, Handrick R, Otte K
    PLoS One. 2019;14(8):e0221679 Pubmed >>
  • Phenotypical microRNA screen reveals a noncanonical role of CDK2 in regulating neutrophil migration.
    Hsu AY, Wang D, Liu S, Lu J, Syahirah R, Bennin DA, Huttenlocher A, Umulis DM, Wan J, Deng Q
    Proc Natl Acad Sci U S A. 2019 Aug 26;: Pubmed >>
  • Tissue-restricted Genome Editing in vivo Specified by MicroRNA-repressible Anti-CRISPR Proteins.
    Lee J, Mou H, Ibraheim R, Liang SQ, Liu P, Xue W, Sontheimer EJ
    RNA. 2019 Aug 22;: Pubmed >>
  • MicroRNA profiling identifies a novel compound with antidepressant properties.
    Sell SL, Boone DR, Weisz HA, Cardenas C, Willey HE, Bolding IJ, Micci MA, Falduto MT, Torres KEO, DeWitt DS, Prough DS, Hellmich HL
    PLoS One. 2019;14(8):e0221163 Pubmed >>
  • Toward a Comprehensive View of MicroRNA Biology.
    Xiao Y, MacRae IJ
    Mol Cell. 2019 Aug 22;75(4):666-668 Pubmed >>
  • The effect of H1N1 vaccination on serum miRNA expression in children: A tale of caution for microRNA microarray studies.
    Drury RE, Pollard AJ, O'Connor D
    PLoS One. 2019;14(8):e0221143 Pubmed >>
  • Beyond sequence homology: Cellular biology limits the potential of XIST to act as a miRNA sponge.
    Marshall EA, Stewart GL, Sage AP, Lam WL, Brown CJ
    PLoS One. 2019;14(8):e0221371 Pubmed >>