All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: June 5, 2020, 12:02 a.m.
Latest Literature
  • Principal component analysis of blood microRNA datasets facilitates diagnosis of diverse diseases.
    Sell SL, Widen SG, Prough DS, Hellmich HL
    PLoS One. 2020;15(6):e0234185 Pubmed >>
  • MicroRNA-451 Escapes Global MicroRNA Crisis by Clustered Neighboring MicroRNA-144 During Erythropoiesis.
    Jiang S
    Mol Cell. 2020 Jun 04;78(5):808-810 Pubmed >>
  • SAFB2 Enables the Processing of Suboptimal Stem-Loop Structures in Clustered Primary miRNA Transcripts.
    Hutter K, Lohmüller M, Jukic A, Eichin F, Avci S, Labi V, Szabo TG, Hoser SM, Hüttenhofer A, Villunger A, Herzog S
    Mol Cell. 2020 Jun 04;78(5):876-889.e6 Pubmed >>
  • microRNA-128: A New Tool in the Smooth Muscle Cell Plasticity Toolbox.
    Rayner KJ
    Circ Res. 2020 Jun 05;126(12):1721-1722 Pubmed >>
  • Response by Ma et al to Letter Regarding Article, "miRNA-Mediated Suppression of a Cardioprotective Cardiokine As a Novel Mechanism Exacerbating Post-MI Remodeling by Sleep Breathing Disorders".
    Ma XL, Du Y, Wang Y, Bond Lau W, Wang X, Nie S, Wei Y
    Circ Res. 2020 Jun 05;126(12):e138-e139 Pubmed >>
  • Letter by Wang et al Regarding Article, "miRNA-Mediated Suppression of a Cardioprotective Cardiokine as a Novel Mechanism Exacerbating Post-MI Remodeling by Sleep Breathing Disorders".
    Wang D, Wang T, Yang X
    Circ Res. 2020 Jun 05;126(12):e136-e137 Pubmed >>
  • High-Resolution In Vivo Identification of miRNA Targets by Halo-Enhanced Ago2 Pull-Down.
    Li X, Pritykin Y, Concepcion CP, Lu Y, La Rocca G, Zhang M, King B, Cook PJ, Au YW, Popow O, Paulo JA, Otis HG, Mastroleo C, Ogrodowski P, Schreiner R, Haigis KM, Betel D, Leslie CS, Ventura A
    Mol Cell. 2020 May 29;: Pubmed >>
  • miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology.
    Chang L, Zhou G, Soufan O, Xia J
    Nucleic Acids Res. 2020 Jun 02;: Pubmed >>
  • mirnaQC: a webserver for comparative quality control of miRNA-seq data.
    Aparicio-Puerta E, Gómez-Martín C, Giannoukakos S, Medina JM, Marchal JA, Hackenberg M
    Nucleic Acids Res. 2020 Jun 02;: Pubmed >>
  • SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis.
    Bajczyk M, Lange H, Bielewicz D, Szewc L, Bhat SS, Dolata J, Kuhn L, Szweykowska-Kulinska Z, Gagliardi D, Jarmolowski A
    Nucleic Acids Res. 2020 May 25;: Pubmed >>
  • MicroRNA-9 mediated the protective effect of ferulic acid on hypoxic-ischemic brain damage in neonatal rats.
    Yao K, Yang Q, Li Y, Lan T, Yu H, Yu Y
    PLoS One. 2020;15(5):e0228825 Pubmed >>
  • Hsa_circ_0000515 is a novel circular RNA implicated in the development of breast cancer through its regulation of the microRNA-296-5p/CXCL10 axis.
    Cai F, Fu W, Tang L, Tang J, Sun J, Fu G, Ye G
    FEBS J. 2020 May 23;: Pubmed >>
  • A Mechanism for microRNA Arm Switching Regulated by Uridylation.
    Kim H, Kim J, Yu S, Lee YY, Park J, Choi RJ, Yoon SJ, Kang SG, Kim VN
    Mol Cell. 2020 May 12;: Pubmed >>
  • MicroRNA-148a regulates low-density lipoprotein metabolism by repressing the (pro)renin receptor.
    Wang N, He L, Lin H, Tan L, Sun Y, Zhang X, Danser AHJ, Lu HS, He Y, Lu X
    PLoS One. 2020;15(5):e0225356 Pubmed >>
  • Roles of DANCR/microRNA-518a-3p/MDMA ceRNA network in the growth and malignant behaviors of colon cancer cells.
    Sun Y, Cao B, Zhou J
    BMC Cancer. 2020 May 18;20(1):434 Pubmed >>
  • Sense-antisense miRNA pairs constitute an elaborate reciprocal regulatory circuit.
    Song Y, Li L, Yang W, Fu Q, Chen W, Fang Z, Li W, Gu N, Zhang R
    Genome Res. 2020 May 18;: Pubmed >>
  • Prognostic implication and functional exploration for microRNA-20a as a molecular biomarker of gastrointestinal cancer.
    Peng Q, Zhao P, Shen Y, Cheng M, Wu Y, Zhu Y
    BMC Cancer. 2020 May 14;20(1):420 Pubmed >>
  • Investigating gene-microRNA networks in atrial fibrillation patients with mitral valve regurgitation.
    Larupa Santos J, Rodríguez I, S Olesen M, Hjorth Bentzen B, Schmitt N
    PLoS One. 2020;15(5):e0232719 Pubmed >>
  • Identification of miRNA signatures associated with radiation-induced late lung injury in mice.
    Rogers CJ, Lukaszewicz AI, Yamada-Hanff J, Micewicz ED, Ratikan JA, Starbird MA, Miller TA, Nguyen C, Lee JT, Olafsen T, Iwamoto KS, McBride WH, Schaue D, Menon N
    PLoS One. 2020;15(5):e0232411 Pubmed >>
  • Evolutionary selection of pestivirus variants with altered or no microRNA dependency.
    Kokkonos KG, Fossat N, Nielsen L, Holm C, Hepkema WM, Bukh J, Scheel TKH
    Nucleic Acids Res. 2020 May 06;: Pubmed >>