All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 203
Last update: Nov. 12, 2019, 12:02 a.m.
Latest Literature
  • Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.).
    Qiu L, Chen R, Fan Y, Huang X, Luo H, Xiong F, Liu J, Zhang R, Lei J, Zhou H, Wu J, Li Y
    BMC Genomics. 2019 Nov 07;20(1):817 Pubmed >>
  • MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis.
    Licursi V, Conte F, Fiscon G, Paci P
    BMC Bioinformatics. 2019 Nov 04;20(1):545 Pubmed >>
  • miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database.
    Kehl T, Kern F, Backes C, Fehlmann T, Stöckel D, Meese E, Lenhof HP, Keller A
    Nucleic Acids Res. 2019 Nov 06;: Pubmed >>
  • WPMIAS: Whole-degradome-based Plant MicroRNA-Target Interaction Analysis Server.
    Fei Y, Mao Y, Shen C, Wang R, Zhang H, Huang J
    Bioinformatics. 2019 Nov 06;: Pubmed >>
  • miRNA-Mediated Suppression of a Cardioprotective Cardiokine as a Novel Mechanism Exacerbating Post-MI Remodeling by Sleep Breathing Disorders.
    Du Y, Wang X, Li LY, Hao W, Zhang H, Li Y, Qin Y, Nie S, Christopher T, Lopez B, Wang Y, Lau WB, Wei YX, Ma XL
    Circ Res. 2019 Nov 07;: Pubmed >>
  • Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data.
    Zhong X, Pla A, Rayner S
    Bioinformatics. 2019 Nov 04;: Pubmed >>
  • Developmental conservation of microRNA gene localization at the nuclear periphery.
    Salataj E, Stathopoulou C, Hafþórsson RA, Nikolaou C, Spilianakis CG
    PLoS One. 2019;14(11):e0223759 Pubmed >>
  • Potential Applications of microRNA profiling to Forensic Investigations.
    Glynn CL
    RNA. 2019 Oct 28;: Pubmed >>
  • Cooperativity between the 3' untranslated region microRNA binding sites is critical for the virulence of eastern equine encephalitis virus.
    Trobaugh DW, Sun C, Bhalla N, Gardner CL, Dunn M, Klimstra WB
    PLoS Pathog. 2019 Oct 28;15(10):e1007867 Pubmed >>
  • Dynamics of microRNA expression during mouse prenatal development.
    Rahmanian S, Murad R, Breschi A, Zeng W, Mackiewicz M, Williams B, Davis CA, Roberts B, Meadows S, Moore D, Trout D, Zaleski C, Dobin A, Sei LH, Drenkow J, Scavelli A, Gingeras TR, Wold BJ, Myers RM, Guigó R, Mortazavi A
    Genome Res. 2019 Oct 23;: Pubmed >>
  • Plasma expression of miRNA-21, - 214, -34a, and -200a in patients with persistent HPV infection and cervical lesions.
    Wang H, Zhang D, Chen Q, Hong Y
    BMC Cancer. 2019 Oct 23;19(1):986 Pubmed >>
  • miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database.
    Huang HY, Lin YC, Li J, Huang KY, Shrestha S, Hong HC, Tang Y, Chen YG, Jin CN, Yu Y, Xu JT, Li YM, Cai XX, Zhou ZY, Chen XH, Pei YY, Hu L, Su JJ, Cui SD, Wang F, Xie YY, Ding SY, Luo MF, Chou CH, Chang NW, Chen KW, Cheng YH, Wan XH, Hsu WL, Lee TY, Wei FX, Huang HD
    Nucleic Acids Res. 2019 Oct 24;: Pubmed >>
  • Potential role for microRNA-16 (miR-16) and microRNA-93 (miR-93) in diagnosis and prediction of disease progression in mycosis fungoides in Egyptian patients.
    Talaat IM, Abdelmaksoud RE, Guimei M, Agamia NF, Nugud A, El-Serafi AT
    PLoS One. 2019;14(10):e0224305 Pubmed >>
  • Correction: A urinary extracellular vesicle microRNA biomarker discovery pipeline; from automated extracellular vesicle enrichment by acoustic trapping to microRNA sequencing.
    Ku A, Ravi N, Yang M, Evander M, Laurell T, Lilja H, Ceder Y
    PLoS One. 2019;14(10):e0224604 Pubmed >>
  • Profiling and bioinformatic analysis reveal differential microRNA expression in the left and right kidneys in normal mice.
    Gao Y, Yang W, Jin L, Xue L, Yang J, Cui Q
    FEBS Lett. 2019 Oct 23;: Pubmed >>
  • DNA methylation, microRNA expression profiles and their relationships with transcriptome in grass-fed and grain-fed Angus cattle rumen tissue.
    Li Y, Carrillo JA, Ding Y, He Y, Zhao C, Liu J, Zan L, Song J
    PLoS One. 2019;14(10):e0214559 Pubmed >>
  • RumimiR: a detailed microRNA database focused on ruminant species.
    Bourdon C, Bardou P, Aujean E, Le Guillou S, Tosser-Klopp G, Le Provost F
    Database (Oxford). 2019 Jan 01;2019: Pubmed >>
  • PopTargs: a database for studying population evolutionary genetics of human microRNA target sites.
    Hatlen A, Helmy M, Marco A
    Database (Oxford). 2019 Jan 01;2019: Pubmed >>
  • MirGeneDB 2.0: the metazoan microRNA complement.
    Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ
    Nucleic Acids Res. 2019 Oct 10;: Pubmed >>
  • Clinical significance and prognostic role of hypoxia-induced microRNA 382 in gastric adenocarcinoma.
    Seo AN, Jung Y, Jang H, Lee E, Bae HI, Son T, Kwon O, Chung HY, Yu W, Lee YM
    PLoS One. 2019;14(10):e0223608 Pubmed >>