All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: Dec. 8, 2019, 12:01 a.m.
Latest Literature
  • The biochemical basis of microRNA targeting efficacy.
    McGeary SE, Lin KS, Shi CY, Pham T, Bisaria N, Kelley GM, Bartel DP
    Science. 2019 Dec 05;: Pubmed >>
  • An improved random forest-based computational model for predicting novel miRNA-disease associations.
    Yao D, Zhan X, Kwoh CK
    BMC Bioinformatics. 2019 Dec 03;20(1):624 Pubmed >>
  • Comparison of tumour and serum specific microRNA changes dissecting their role in pancreatic ductal adenocarcinoma: a meta-analysis.
    Chhatriya B, Mukherjee M, Ray S, Sarkar P, Chatterjee S, Nath D, Das K, Goswami S
    BMC Cancer. 2019 Dec 03;19(1):1175 Pubmed >>
  • Correction to: A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri.
    Baumgart M, Barth E, Savino A, Groth M, Koch P, Petzold A, Arisi I, Platzer M, Marz M, Cellerino A
    BMC Genomics. 2019 Nov 27;20(1):898 Pubmed >>
  • PRMT1-mediated methylation of the microprocessor-associated proteins regulates microRNA biogenesis.
    Spadotto V, Giambruno R, Massignani E, Mihailovich M, Maniaci M, Patuzzo F, Ghini F, Nicassio F, Bonaldi T
    Nucleic Acids Res. 2019 Nov 28;: Pubmed >>
  • MiRNA therapeutics based on logic circuits of biological pathways.
    Boscaino V, Fiannaca A, La Paglia L, La Rosa M, Rizzo R, Urso A
    BMC Bioinformatics. 2019 Nov 22;20(Suppl 9):344 Pubmed >>
  • Diagnostic plasma miRNA-profiles for ovarian cancer in patients with pelvic mass.
    Oliveira DNP, Carlsen AL, Heegaard NHH, Prahm KP, Christensen IJ, Høgdall CK, Høgdall EV
    PLoS One. 2019;14(11):e0225249 Pubmed >>
  • The C. elegans 3' UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3'-UTR biology, and miRNA targeting.
    Steber HS, Gallante C, O'Brien S, Chiu PL, Mangone M
    Genome Res. 2019 Nov 19;: Pubmed >>
  • Potent and sustained huntingtin lowering via AAV5 encoding miRNA preserves striatal volume and cognitive function in a humanized mouse model of Huntington disease.
    Caron NS, Southwell AL, Brouwers CC, Cengio LD, Xie Y, Black HF, Anderson LM, Ko S, Zhu X, van Deventer SJ, Evers MM, Konstantinova P, Hayden MR
    Nucleic Acids Res. 2019 Nov 20;: Pubmed >>
  • TFmiR2: Constructing and analyzing disease-, tissue- and process-specific transcription factor and microRNA co-regulatory networks.
    Nazarieh M, Hamed M, Spaniol C, Will T, Helms V
    Bioinformatics. 2019 Nov 20;: Pubmed >>
  • Inducible microRNA-200c decreases motility of breast cancer cells and reduces filamin A.
    Ljepoja B, Schreiber C, Gegenfurtner FA, García-Roman J, Köhler B, Zahler S, Rädler JO, Wagner E, Roidl A
    PLoS One. 2019;14(11):e0224314 Pubmed >>
  • Integrated analysis of miRNA landscape and cellular networking pathways in stage-specific prostate cancer.
    Verma S, Pandey M, Shukla GC, Singh V, Gupta S
    PLoS One. 2019;14(11):e0224071 Pubmed >>
  • Robust differential microRNA targeting driven by supplementary interactions in vitro.
    Xiao Y, MacRae I
    RNA. 2019 Nov 15;: Pubmed >>
  • DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts.
    Karagkouni D, Paraskevopoulou MD, Tastsoglou S, Skoufos G, Karavangeli A, Pierros V, Zacharopoulou E, Hatzigeorgiou AG
    Nucleic Acids Res. 2019 Nov 16;: Pubmed >>
  • PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks.
    Zhang P, Meng X, Chen H, Liu Y, Xue J, Zhou Y, Chen M
    Database (Oxford). 2017 Jan 01;2017: Pubmed >>
  • MicroRNA-124-3p suppresses mouse lip mesenchymal cell proliferation through the regulation of genes associated with cleft lip in the mouse.
    Suzuki A, Yoshioka H, Summakia D, Desai NG, Jun G, Jia P, Loose DS, Ogata K, Gajera MV, Zhao Z, Iwata J
    BMC Genomics. 2019 Nov 14;20(1):852 Pubmed >>
  • Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum.
    Yang Q, Liu S, Han X, Ma J, Deng W, Wang X, Guo H, Xia X
    BMC Genomics. 2019 Nov 15;20(1):865 Pubmed >>
  • Insight into genetic regulation of miRNA in mouse brain.
    Kordas G, Rudra P, Hendricks A, Saba L, Kechris K
    BMC Genomics. 2019 Nov 13;20(1):849 Pubmed >>
  • An extracellular microRNA can rescue lives in sepsis.
    Van Looveren K, Van Wyngene L, Libert C
    EMBO Rep. 2019 Nov 14;:e49193 Pubmed >>
  • Extracellular microRNA 130b-3p inhibits eCIRP-induced inflammation.
    Gurien SD, Aziz M, Jin H, Wang H, He M, Al-Abed Y, Nicastro JM, Coppa GF, Wang P
    EMBO Rep. 2019 Nov 14;:e48075 Pubmed >>