All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 203
Last update: July 4, 2020, 12:02 a.m.
Latest Literature
  • Repression of tick microRNA-133 induces organic anion transporting polypeptide expression critical for Anaplasma phagocytophilum survival in the vector and transmission to the vertebrate host.
    Ramasamy E, Taank V, Anderson JF, Sultana H, Neelakanta G
    PLoS Genet. 2020 Jul;16(7):e1008856 Pubmed >>
  • Correction: Age-related transcriptional modules and TF-miRNA-mRNA interactions in neonatal and infant human thymus.
    PLOS ONE staff
    PLoS One. 2020;15(7):e0235767 Pubmed >>
  • The human box C/D snoRNA U3 is a miRNA source and miR-U3 regulates expression of sortin nexin 27.
    Lemus-Diaz N, Ferreira RR, Bohnsack KE, Gruber J, Bohnsack MT
    Nucleic Acids Res. 2020 Jul 01;: Pubmed >>
  • MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes.
    Kataruka S, Modrak M, Kinterova V, Malik R, Zeitler DM, Horvat F, Kanka J, Meister G, Svoboda P
    Nucleic Acids Res. 2020 Jul 01;: Pubmed >>
  • Expression of concern: MicroRNA-152 regulates DNA methyltransferase 1 and is involved in the development and lactation of Mammary Glands in Dairy Cows.
    PLOS ONE Editors
    PLoS One. 2020;15(6):e0234680 Pubmed >>
  • Expression of activating transcription factor 5 (ATF5) is mediated by microRNA-520b-3p under diverse cellular stress in cancer cells.
    Gaither KA, Watson CJW, Madarampalli B, Lazarus P
    PLoS One. 2020;15(6):e0225044 Pubmed >>
  • Integrative expression network analysis of microRNA and gene isoforms in sacred lotus.
    Zhang Y, Rahmani RS, Yang X, Chen J, Shi T
    BMC Genomics. 2020 Jun 25;21(1):429 Pubmed >>
  • A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy.
    Venø MT, Reschke CR, Morris G, Connolly NMC, Su J, Yan Y, Engel T, Jimenez-Mateos EM, Harder LM, Pultz D, Haunsberger SJ, Pal A, Heller JP, Campbell A, Langa E, Brennan GP, Conboy K, Richardson A, Norwood BA, Costard LS, Neubert V, Del Gallo F, Salvetti B, Vangoor VR, Sanz-Rodriguez A, Muilu J, Fabene PF, Pasterkamp RJ, Prehn JHM, Schorge S, Andersen JS, Rosenow F, Bauer S, Kjems J, Henshall DC
    Proc Natl Acad Sci U S A. 2020 Jun 24;: Pubmed >>
  • JNK pathway plays a key role in the immune system of the pea aphid and is regulated by microRNA-184.
    Ma L, Liu L, Zhao Y, Yang L, Chen C, Li Z, Lu Z
    PLoS Pathog. 2020 Jun 25;16(6):e1008627 Pubmed >>
  • Retraction: Hepatitis C Virus Core Protein Down-Regulates p21Waf1/Cip1 and Inhibits Curcumin-Induced Apoptosis through MicroRNA-345 Targeting in Human Hepatoma Cells.
    PLOS ONE Editors
    PLoS One. 2020;15(6):e0235375 Pubmed >>
  • The microRNA-130a-5p/RUNX2/STK32A network modulates tumor invasive and metastatic potential in non-small cell lung cancer.
    Ma F, Xie Y, Lei Y, Kuang Z, Liu X
    BMC Cancer. 2020 Jun 22;20(1):580 Pubmed >>
  • Unravelling the mysteries of microRNA in breast milk.
    Nguyen T
    Nature. 2020 Jun;582(7812):S12-S13 Pubmed >>
  • MicroRNA-18a targeting of the STK4/MST1 tumour suppressor is necessary for transformation in HPV positive cervical cancer.
    Morgan EL, Patterson MR, Ryder EL, Lee SY, Wasson CW, Harper KL, Li Y, Griffin S, Blair GE, Whitehouse A, Macdonald A
    PLoS Pathog. 2020 Jun 18;16(6):e1008624 Pubmed >>
  • RWRMTN: a tool for predicting disease-associated microRNAs based on a microRNA-target gene network.
    Le DH, Tran TTH
    BMC Bioinformatics. 2020 Jun 15;21(1):244 Pubmed >>
  • A lncRNA-miRNA-mRNA network for human primed, naive and extended pluripotent stem cells.
    Ma Z, Li Y, Zhang Y, Chen J, Tan T, Fan Y
    PLoS One. 2020;15(6):e0234628 Pubmed >>
  • CPPED1-targeting microRNA-371a-5p expression in human placenta associates with spontaneous delivery.
    Daddali R, Ojaniemi M, Hallman M, Rämet M, Haapalainen AM
    PLoS One. 2020;15(6):e0234403 Pubmed >>
  • GreenCircRNA: a database for plant circRNAs that act as miRNA decoys.
    Zhang J, Hao Z, Yin S, Li G
    Database (Oxford). 2020 Jan 01;2020: Pubmed >>
  • Characterization of microRNA profiles in the mammary gland tissue of dairy goats at the late lactation, dry period and late gestation stages.
    Xuan R, Chao T, Wang A, Zhang F, Sun P, Liu S, Guo M, Wang G, Ji Z, Wang J, Cheng M
    PLoS One. 2020;15(6):e0234427 Pubmed >>
  • Principal component analysis of blood microRNA datasets facilitates diagnosis of diverse diseases.
    Sell SL, Widen SG, Prough DS, Hellmich HL
    PLoS One. 2020;15(6):e0234185 Pubmed >>
  • MicroRNA-451 Escapes Global MicroRNA Crisis by Clustered Neighboring MicroRNA-144 During Erythropoiesis.
    Jiang S
    Mol Cell. 2020 Jun 04;78(5):808-810 Pubmed >>