All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: April 6, 2020, 12:01 a.m.
Latest Literature
  • MiRNA profiles in blood plasma from mother-child duos in human biobanks and the implication of sample quality: Circulating miRNAs as potential early markers of child health.
    Dypås LB, Gützkow KB, Olsen AK, Duale N
    PLoS One. 2020;15(4):e0231040 Pubmed >>
  • Structural Basis for pri-miRNA Recognition by Drosha.
    Jin W, Wang J, Liu CP, Wang HW, Xu RM
    Mol Cell. 2020 Mar 25;: Pubmed >>
  • Cryo-EM Structures of Human Drosha and DGCR8 in Complex with Primary MicroRNA.
    Partin AC, Zhang K, Jeong BC, Herrell E, Li S, Chiu W, Nam Y
    Mol Cell. 2020 Mar 21;: Pubmed >>
  • The miR-9b microRNA mediates dimorphism and development of wing in aphids.
    Shang F, Niu J, Ding BY, Zhang W, Wei DD, Wei D, Jiang HB, Wang JJ
    Proc Natl Acad Sci U S A. 2020 Mar 26;: Pubmed >>
  • Correction: An explorative study identifies miRNA signatures for the diagnosis of non-celiac wheat sensitivity.
    PLOS ONE Staff
    PLoS One. 2020;15(3):e0231273 Pubmed >>
  • Glomerular endothelial derived vesicles mediate podocyte dysfunction: A potential role for miRNA.
    Hill N, Michell DL, Ramirez-Solano M, Sheng Q, Pusey C, Vickers KC, Woollard KJ
    PLoS One. 2020;15(3):e0224852 Pubmed >>
  • MLK3 is a newly identified microRNA-520b target that regulates liver cancer cell migration.
    Zhang F, Zhu Y, Wu S, Hou G, Wu N, Qian L, Yang D
    PLoS One. 2020;15(3):e0230716 Pubmed >>
  • Salivary microRNA miR-let-7a-5p and miR-3928 could be used as potential diagnostic bio-markers for head and neck squamous cell carcinoma.
    Fadhil RS, Wei MQ, Nikolarakos D, Good D, Nair RG
    PLoS One. 2020;15(3):e0221779 Pubmed >>
  • Ago2-Dependent Processing Allows miR-451 to Evade the Global MicroRNA Turnover Elicited during Erythropoiesis.
    Kretov DA, Walawalkar IA, Mora-Martin A, Shafik AM, Moxon S, Cifuentes D
    Mol Cell. 2020 Mar 12;: Pubmed >>
  • Position-wise binding preference is important for miRNA target site prediction.
    Talukder A, Li X, Hu H
    Bioinformatics. 2020 Mar 18;: Pubmed >>
  • primirTSS: An R package for identifying cell-specific microRNA transcription start sites.
    Li P, Xu Q, Hua X, Xie Z, Li J, Wang J
    Bioinformatics. 2020 Mar 14;: Pubmed >>
  • Correction for Hsu et al., Phenotypical microRNA screen reveals a noncanonical role of CDK2 in regulating neutrophil migration.

    Proc Natl Acad Sci U S A. 2020 Mar 09;: Pubmed >>
  • Endothelium-Targeted Deletion of microRNA-15a/16-1 Promotes Post-Stroke Angiogenesis and Improves Long-Term Neurological Recovery.
    Sun P, Zhang K, Hassan SH, Zhang X, Tang X, Pu H, Stetler RA, Chen J, Yin K
    Circ Res. 2020 Mar 05;: Pubmed >>
  • Genome-wide analysis of MicroRNA-messenger RNA interactome in ex-vivo gill filaments, Anguilla japonica.
    Ng HM, Ho JCH, Nong W, Hui JHL, Lai KP, Wong CKC
    BMC Genomics. 2020 Mar 04;21(1):208 Pubmed >>
  • Genome-wide integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism.
    Chen YJ, Chen CY, Mai TL, Chuang CF, Chen YC, Gupta SK, Yen L, Wang YD, Chuang TJ
    Genome Res. 2020 Mar 03;: Pubmed >>
  • Postprandial transfer of colostral extracellular vesicles and their protein and miRNA cargo in neonatal calves.
    Kirchner B, Buschmann D, Paul V, Pfaffl MW
    PLoS One. 2020;15(2):e0229606 Pubmed >>
  • miRNA profiling in renal carcinoma suggest the existence of a group of pro-angionenic tumors in localized clear cell renal carcinoma.
    Trilla-Fuertes L, Miranda N, Castellano D, López-Vacas R, Farfán Tello CA, de Velasco G, Villacampa F, López-Camacho E, Prado-Vázquez G, Zapater-Moros A, Espinosa E, Fresno Vara JÁ, Pinto Á, Gámez-Pozo A
    PLoS One. 2020;15(2):e0229075 Pubmed >>
  • Combining feature selection and shape analysis uncovers precise rules for miRNA regulation in Huntington's disease mice.
    Mégret L, Nair SS, Dancourt J, Aaronson J, Rosinski J, Neri C
    BMC Bioinformatics. 2020 Feb 24;21(1):75 Pubmed >>
  • Pancreatic β cell microRNA-26a alleviates type 2 diabetes by improving peripheral insulin sensitivity and preserving β cell function.
    Xu H, Du X, Xu J, Zhang Y, Tian Y, Liu G, Wang X, Ma M, Du W, Liu Y, Dai L, Huang W, Tong N, Wei Y, Fu X
    PLoS Biol. 2020 Feb 24;18(2):e3000603 Pubmed >>
  • miRNA expression profiling of hereditary breast tumors from BRCA1- and BRCA2-germline mutation carriers in Brazil.
    Pessôa-Pereira D, Evangelista AF, Causin RL, da Costa Vieira RA, Abrahão-Machado LF, Santana IVV, da Silva VD, de Souza KCB, de Oliveira-Silva RJ, Fernandes GC, Reis RM, Palmero EI, Marques MMC
    BMC Cancer. 2020 Feb 22;20(1):143 Pubmed >>