All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: Feb. 15, 2020, 12:01 a.m.
Latest Literature
  • Telling footprints: exon junction complexes mark targets of nonsense- and miRNA-mediated mRNA decay.
    Hõrak H
    Plant Cell. 2020 Feb 12;: Pubmed >>
  • LidNA, a miRNA inhibitor constructed with unmodified DNA, requires an xxxA insertion sequence in miRNA binding site for its potent inhibitory activity.
    Tachibana A, Saito S, Fujiyama Y, Tanabe T
    FEBS Lett. 2020 Feb 12;: Pubmed >>
  • Identifying a new microRNA signature as a prognostic biomarker in colon cancer.
    Lv Y, Duanmu J, Fu X, Li T, Jiang Q
    PLoS One. 2020;15(2):e0228575 Pubmed >>
  • A combined microRNA and transcriptome analyses illuminates the resistance response of rice against brown planthopper.
    Tan J, Wu Y, Guo J, Li H, Zhu L, Chen R, He G, Du B
    BMC Genomics. 2020 Feb 10;21(1):144 Pubmed >>
  • MicroRNA-155 governs SHIP-1 expression and localization in NK cells and regulates subsequent infiltration into murine AT3 mammary carcinoma.
    Kandell WM, Donatelli SS, Trinh TL, Calescibetta AR, So T, Tu N, Gilvary DL, Chen X, Cheng P, Adams WA, Chen YK, Liu J, Djeu JY, Wei S, Eksioglu EA
    PLoS One. 2020;15(2):e0225820 Pubmed >>
  • The association between microRNA-21 and hypertension-induced cardiac remodeling.
    Watanabe K, Narumi T, Watanabe T, Otaki Y, Takahashi T, Aono T, Goto J, Toshima T, Sugai T, Wanezaki M, Kutsuzawa D, Kato S, Tamura H, Nishiyama S, Takahashi H, Arimoto T, Shishido T, Watanabe M
    PLoS One. 2020;15(2):e0226053 Pubmed >>
  • miRNA expression in advanced Algerian breast cancer tissues.
    Tfaily MA, Nassar F, Sellam LS, Amir-Tidadini ZC, Asselah F, Bourouba M, Rihab N
    PLoS One. 2020;15(2):e0227928 Pubmed >>
  • MicroRNA exporter HuR clears the internalized pathogens by promoting pro-inflammatory response in infected macrophages.
    Goswami A, Mukherjee K, Mazumder A, Ganguly S, Mukherjee I, Chakrabarti S, Roy S, Sundar S, Chattopadhyay K, Bhattacharyya SN
    EMBO Mol Med. 2020 Feb 07;:e11011 Pubmed >>
  • A conserved sequence signature is essential for robust plant miRNA biogenesis.
    Narjala A, Nair A, Tirumalai V, Hari Sundar GV, Shivaprasad PV
    Nucleic Acids Res. 2020 Feb 06;: Pubmed >>
  • Immune-related miRNA-mRNA regulation network in the livers of DHAV-3-infected ducklings.
    Wu F, Lu F, Fan X, Chao J, Liu C, Pan Q, Sun H, Zhang X
    BMC Genomics. 2020 Feb 04;21(1):123 Pubmed >>
  • Evolutionary Dynamics of microRNA target sites across vertebrate evolution.
    Simkin A, Geissler R, McIntyre ABR, Grimson A
    PLoS Genet. 2020 Feb 03;16(2):e1008285 Pubmed >>
  • Integrated mRNA and miRNA transcriptome analysis reveals a regulatory network for tuber expansion in Chinese yam (Dioscorea opposita).
    Zhou Y, Luo S, Hameed S, Xiao D, Zhan J, Wang A, He L
    BMC Genomics. 2020 Feb 03;21(1):117 Pubmed >>
  • Correction to: Identifying miRNA synergism using multiple-intervention causal inference.
    Zhang J, Pham VVH, Liu L, Xu T, Truong B, Li J, Rao N, Le TD
    BMC Bioinformatics. 2020 Jan 29;21(1):32 Pubmed >>
  • CRISPR screening strategies for microRNA target identification.
    Yang B, McJunkin K
    FEBS J. 2020 Jan 23;: Pubmed >>
  • A prospective case-control study on miRNA circulating levels in subjects born small for gestational age (SGA) evaluated from childhood into young adulthood.
    Inzaghi E, Kistner A, Germani D, Deodati A, Vanpee M, Legnevall L, Berinder K, Cianfarani S
    PLoS One. 2020;15(1):e0228075 Pubmed >>
  • MicroRNA expression and DNA methylation profiles do not distinguish between primary and recurrent well-differentiated liposarcoma.
    Vos M, Boers R, Vriends ALM, Boers J, van Kuijk PF, van Houdt WJ, van Leenders GJLH, Wagrodzki M, van IJcken WFJ, Gribnau J, Grünhagen DJ, Verhoef C, Sleijfer S, Wiemer EAC
    PLoS One. 2020;15(1):e0228014 Pubmed >>
  • The internal loops in the lower stem of primary microRNA transcripts facilitate single cleavage of human Microprocessor.
    Nguyen TL, Nguyen TD, Bao S, Li S, Nguyen TA
    Nucleic Acids Res. 2020 Jan 20;: Pubmed >>
  • miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies.
    Pan CY, Lin WC
    Database (Oxford). 2020 Jan 01;2020: Pubmed >>
  • miRNA and circRNA expression patterns in mouse brain during toxoplasmosis development.
    Zhou CX, Ai K, Huang CQ, Guo JJ, Cong H, He SY, Zhu XQ
    BMC Genomics. 2020 Jan 14;21(1):46 Pubmed >>
  • Deep neural networks for human microRNA precursor detection.
    Zheng X, Fu X, Wang K, Wang M
    BMC Bioinformatics. 2020 Jan 13;21(1):17 Pubmed >>