All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 203
Last update: Jan. 25, 2020, 12:01 a.m.
Latest Literature
  • MicroRNA expression and DNA methylation profiles do not distinguish between primary and recurrent well-differentiated liposarcoma.
    Vos M, Boers R, Vriends ALM, Boers J, van Kuijk PF, van Houdt WJ, van Leenders GJLH, Wagrodzki M, van IJcken WFJ, Gribnau J, Grünhagen DJ, Verhoef C, Sleijfer S, Wiemer EAC
    PLoS One. 2020;15(1):e0228014 Pubmed >>
  • The internal loops in the lower stem of primary microRNA transcripts facilitate single cleavage of human Microprocessor.
    Nguyen TL, Nguyen TD, Bao S, Li S, Nguyen TA
    Nucleic Acids Res. 2020 Jan 20;: Pubmed >>
  • miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies.
    Pan CY, Lin WC
    Database (Oxford). 2020 Jan 01;2020: Pubmed >>
  • miRNA and circRNA expression patterns in mouse brain during toxoplasmosis development.
    Zhou CX, Ai K, Huang CQ, Guo JJ, Cong H, He SY, Zhu XQ
    BMC Genomics. 2020 Jan 14;21(1):46 Pubmed >>
  • Deep neural networks for human microRNA precursor detection.
    Zheng X, Fu X, Wang K, Wang M
    BMC Bioinformatics. 2020 Jan 13;21(1):17 Pubmed >>
  • FilTar: Using RNA-Seq data to improve microRNA target prediction accuracy in animals.
    Bradley T, Moxon S
    Bioinformatics. 2020 Jan 13;: Pubmed >>
  • MDEHT: a Multivariate Approach for Detecting Differential Expression of MicroRNA Isoform Data in RNA Sequencing Studies.
    Amanullah M, Yu M, Sun X, Luo A, Zhou Q, Zhou L, Hou L, Wang W, Lu W, Liu P, Lu Y
    Bioinformatics. 2020 Jan 13;: Pubmed >>
  • Neural Inductive Matrix Completion with Graph Convolutional Networks for miRNA-disease Association Prediction.
    Li J, Zhang S, Liu T, Ning C, Zhang Z, Zhou W
    Bioinformatics. 2020 Jan 06;: Pubmed >>
  • Integrated analysis of directly captured microRNA targets reveals the impact of microRNAs on mammalian transcriptome.
    Bjerke GA, Yi R
    RNA. 2020 Jan 03;: Pubmed >>
  • Retraction: MicroRNA-493 Suppresses Tumor Growth, Invasion and Metastasis of Lung cancer by Regulating E2F1.
    Gu Y, Cheng Y, Song Y, Zhang Z, Deng M, Wang C, Zheng G, He Z
    PLoS One. 2019;14(12):e0227503 Pubmed >>
  • Identifying miRNA synergism using multiple-intervention causal inference.
    Zhang J, Pham VVH, Liu L, Xu T, Truong B, Li J, Rao N, Le TD
    BMC Bioinformatics. 2019 Dec 27;20(Suppl 23):613 Pubmed >>
  • Fast and accurate microRNA search using CNN.
    Tang X, Sun Y
    BMC Bioinformatics. 2019 Dec 27;20(Suppl 23):646 Pubmed >>
  • RCMF: a robust collaborative matrix factorization method to predict miRNA-disease associations.
    Cui Z, Liu JX, Gao YL, Zheng CH, Wang J
    BMC Bioinformatics. 2019 Dec 24;20(Suppl 25):686 Pubmed >>
  • Identification of Pparγ-modulated miRNA hubs that target the fibrotic tumor microenvironment.
    Winkler I, Bitter C, Winkler S, Weichenhan D, Thavamani A, Hengstler JG, Borkham-Kamphorst E, Kohlbacher O, Plass C, Geffers R, Weiskirchen R, Nordheim A
    Proc Natl Acad Sci U S A. 2019 Dec 23;: Pubmed >>
  • MicroRNA-mRNA expression profiles and their potential role in cadmium stress response in Brassica napus.
    Fu Y, Mason AS, Zhang Y, Lin B, Xiao M, Fu D, Yu H
    BMC Plant Biol. 2019 Dec 19;19(1):570 Pubmed >>
  • LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination.
    Zhang W, Tang G, Zhou S, Niu Y
    BMC Genomics. 2019 Dec 20;20(Suppl 11):946 Pubmed >>
  • Complexity measures of the mature miRNA for improving pre-miRNAs prediction.
    Raad J, Stegmayer G, Milone DH
    Bioinformatics. 2019 Dec 20;: Pubmed >>
  • iMIRAGE: An R package to impute microRNA expression using protein-coding genes.
    Nath A, Chang J, Huang RS
    Bioinformatics. 2019 Dec 20;: Pubmed >>
  • A lab-on-a-chip for rapid miRNA extraction.
    Behrmann O, Hügle M, Bronsert P, Herde B, Heni J, Schramm M, Hufert FT, Urban GA, Dame G
    PLoS One. 2019;14(12):e0226571 Pubmed >>
  • An explorative study identifies miRNA signatures for the diagnosis of non-celiac wheat sensitivity.
    Clemente E, Efthymakis K, Carletti E, Capone V, Sperduti S, Bologna G, Marchisio M, Di Nicola M, Neri M, Sallese M
    PLoS One. 2019;14(12):e0226478 Pubmed >>