All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: Sept. 23, 2020, midnight
Latest Literature
  • In silico transcriptional analysis of mRNA and miRNA reveals unique biosignatures that characterizes different types of diabetes.
    Cubillos-Angulo JM, Vinhaes CL, Fukutani ER, Albuquerque VVS, Queiroz ATL, Andrade BB, Fukutani KF
    PLoS One. 2020;15(9):e0239061 Pubmed >>
  • Development of a serum miRNA panel for detection of early stage non-small cell lung cancer.
    Ying L, Du L, Zou R, Shi L, Zhang N, Jin J, Xu C, Zhang F, Zhu C, Wu J, Chen K, Huang M, Wu Y, Zhang Y, Zheng W, Pan X, Chen B, Lin A, Tam JKC, van Dam RM, Lai DTM, Chia KS, Zhou L, Too HP, Yu H, Mao W, Su D
    Proc Natl Acad Sci U S A. 2020 Sep 17;: Pubmed >>
  • Multi-omics profiling reveals microRNA-mediated insulin signaling networks.
    Lin YC, Huang HY, Shrestha S, Chou CH, Chen YH, Chen CR, Hong HC, Li J, Chang YA, Chiew MY, Huang YR, Tu SJ, Sun TH, Weng SL, Tseng CP, Huang HD
    BMC Bioinformatics. 2020 Sep 17;21(Suppl 13):389 Pubmed >>
  • An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs.
    Bertolazzi G, Benos PV, Tumminello M, Coronnello C
    BMC Bioinformatics. 2020 Sep 16;21(Suppl 8):201 Pubmed >>
  • Integrated analysis of lncRNA, miRNA and mRNA reveals novel insights into the fertility regulation of large white sows.
    Hu H, Jia Q, Xi J, Zhou B, Li Z
    BMC Genomics. 2020 Sep 14;21(1):636 Pubmed >>
  • NEMPD: a network embedding-based method for predicting miRNA-disease associations by preserving behavior and attribute information.
    Ji BY, You ZH, Chen ZH, Wong L, Yi HC
    BMC Bioinformatics. 2020 Sep 10;21(1):401 Pubmed >>
  • MicroRNA expression profiles in molecular subtypes of clear-cell renal cell carcinoma are associated with clinical outcome and repression of specific mRNA targets.
    Verbiest A, Van Hoef V, Rodriguez-Antona C, García-Donas J, Graña-Castro O, Albersen M, Baldewijns M, Laenen A, Roussel E, Schöffski P, Wozniak A, Caruso S, Couchy G, Zucman-Rossi J, Beuselinck B
    PLoS One. 2020;15(9):e0238809 Pubmed >>
  • miRNA-Based Therapies in B Cell Non-Hodgkin Lymphoma.
    Fuertes T, Ramiro AR, de Yebenes VG
    Trends Immunol. 2020 Sep 01;: Pubmed >>
  • Long non-coding RNA SNHG3 promotes breast cancer cell proliferation and metastasis by binding to microRNA-154-3p and activating the notch signaling pathway.
    Jiang H, Li X, Wang W, Dong H
    BMC Cancer. 2020 Sep 03;20(1):838 Pubmed >>
  • Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress.
    Lee J, Lee S, Son J, Lim H, Kim E, Kim D, Ha S, Hur T, Lee S, Choi I
    PLoS One. 2020;15(8):e0231125 Pubmed >>
  • PUMA: PANDA Using MicroRNA Associations.
    Kuijjer ML, Fagny M, Marin A, Quackenbush J, Glass K
    Bioinformatics. 2020 Jun 17;: Pubmed >>
  • MicroRNA-195 controls MICU1 expression and tumor growth in ovarian cancer.
    Rao G, Dwivedi SKD, Zhang Y, Dey A, Shameer K, Karthik R, Srikantan S, Hossen MN, Wren JD, Madesh M, Dudley JT, Bhattacharya R, Mukherjee P
    EMBO Rep. 2020 Aug 27;:e48483 Pubmed >>
  • Robust partitioning of microRNA targets from downstream regulatory changes.
    Patel RK, West JD, Jiang Y, Fogarty EA, Grimson A
    Nucleic Acids Res. 2020 Aug 21;: Pubmed >>
  • mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana.
    Bhat SS, Bielewicz D, Gulanicz T, Bodi Z, Yu X, Anderson SJ, Szewc L, Bajczyk M, Dolata J, Grzelak N, Smolinski DJ, Gregory BD, Fray RG, Jarmolowski A, Szweykowska-Kulinska Z
    Proc Natl Acad Sci U S A. 2020 Aug 17;: Pubmed >>
  • Ultraviolet B irradiation enhances the secretion of exosomes by human primary melanocytes and changes their exosomal miRNA profile.
    Shen Z, Sun J, Shao J, Xu J
    PLoS One. 2020;15(8):e0237023 Pubmed >>
  • MicroRNA-dependent inhibition of PFN2 orchestrates ERK activation and pluripotent state transitions by regulating endocytosis.
    Sangokoya C, Blelloch R
    Proc Natl Acad Sci U S A. 2020 Aug 11;: Pubmed >>
  • Correction to: MicroRNA-145 Regulates the Differentiation of Adipose Stem Cells Toward Microvascular Endothelial Cells and Promotes Angiogenesis.

    Circ Res. 2020 Aug 14;127(5):e139 Pubmed >>
  • Endocrine Delivery of MicroRNA-210: A Trusted Traveler That Mediates Pulmonary Hypertension.
    Leopold JA
    Circ Res. 2020 Aug 14;127(5):693-695 Pubmed >>
  • Global cataloguing of variations in untranslated regions of viral genome and prediction of key host RNA binding protein-microRNA interactions modulating genome stability in SARS-CoV-2.
    Mukherjee M, Goswami S
    PLoS One. 2020;15(8):e0237559 Pubmed >>
  • Salivary microRNA 155, 146a/b and 203: A pilot study for potentially non-invasive diagnostic biomarkers of periodontitis and diabetes mellitus.
    Al-Rawi NH, Al-Marzooq F, Al-Nuaimi AS, Hachim MY, Hamoudi R
    PLoS One. 2020;15(8):e0237004 Pubmed >>