All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: Dec. 5, 2020, 12:02 a.m.
Latest Literature
  • IRE1-mediated miRNA maturation in macrophage phosphoinositide signaling.
    Avril T, Chevet E
    EMBO Rep. 2020 Dec 03;:e51929 Pubmed >>
  • MicroRNA transcriptomic analysis of the sixth leaf of maize (Zea mays L.) revealed a regulatory mechanism of jointing stage heterosis.
    Hou G, Dong Y, Zhu F, Zhao Q, Li T, Dou D, Ma X, Wu L, Ku L, Chen Y
    BMC Plant Biol. 2020 Nov 30;20(1):541 Pubmed >>
  • HAHmiR.DB: a server platform for high-altitude human miRNA-gene coregulatory networks and associated regulatory circuits.
    Khurana P, Gupta A, Sugadev R, Sharma YK, Kumar B
    Database (Oxford). 2020 Dec 01;2020: Pubmed >>
  • MicroRNA-disease association prediction by matrix tri-factorization.
    Li H, Guo Y, Cai M, Li L
    BMC Genomics. 2020 Nov 18;21(Suppl 10):617 Pubmed >>
  • Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
    Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI
    Nucleic Acids Res. 2020 Nov 19;: Pubmed >>
  • MDIPA: a microRNA-drug interaction prediction approach based on non-negative matrix factorization.
    Jamali AA, Kusalik A, Wu FX
    Bioinformatics. 2020 Jun 17;: Pubmed >>
  • Rox8 promotes microRNA-dependent yki messenger RNA decay.
    Guo X, Sun Y, Azad T, Janse van Rensburg HJ, Luo J, Yang S, Liu P, Lv Z, Zhan M, Lu L, Zhou Y, Ma X, Zhang X, Yang X, Xue L
    Proc Natl Acad Sci U S A. 2020 Nov 17;: Pubmed >>
  • Retraction: The role of NF-κB and miRNA in oral cancer and cancer stem cells with or without HPV16 infection.
    PLOS ONE Editors
    PLoS One. 2020;15(11):e0242853 Pubmed >>
  • Structure-function analysis of microRNA 3'-end trimming by Nibbler.
    Xie W, Sowemimo I, Hayashi R, Wang J, Burkard TR, Brennecke J, Ameres SL, Patel DJ
    Proc Natl Acad Sci U S A. 2020 Nov 16;: Pubmed >>
  • A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming.
    Han J, LaVigne CA, Jones BT, Zhang H, Gillett F, Mendell JT
    Science. 2020 Nov 12;: Pubmed >>
  • The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation.
    Shi CY, Kingston ER, Kleaveland B, Lin DH, Stubna MW, Bartel DP
    Science. 2020 Nov 12;: Pubmed >>
  • Functional Atlas of Primary miRNA Maturation by the Microprocessor.
    Rice GM, Shivashankar V, Ma EJ, Baryza JL, Nutiu R
    Mol Cell. 2020 Nov 04;: Pubmed >>
  • Circulating whole genome miRNA expression corresponds to progressive right ventricle enlargement and systolic dysfunction in adults with tetralogy of Fallot.
    Weldy CS, Syed SA, Amsallem M, Hu DQ, Ji X, Punn R, Taylor A, Navarre B, Reddy S
    PLoS One. 2020;15(11):e0241476 Pubmed >>
  • Verification of the role of exosomal microRNA in colorectal tumorigenesis using human colorectal cancer cell lines.
    Noh GT, Kwon J, Kim J, Park M, Choi DW, Cho KA, Woo SY, Oh BY, Lee KY, Lee RA
    PLoS One. 2020;15(11):e0242057 Pubmed >>
  • Prognostic role of microRNA 182 and microRNA 18a in locally advanced triple negative breast cancer.
    Bajaj R, Tripathi R, Sridhar TS, Korlimarla A, Choudhury KD, Suryavanshi M, Mehta A, Doval DC
    PLoS One. 2020;15(11):e0242190 Pubmed >>
  • An miRNA linked to metabolic disease.
    Stower H
    Nat Med. 2020 Nov 05;: Pubmed >>
  • Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum.
    Fu F, Girma G, Mengiste T
    BMC Genomics. 2020 Nov 03;21(1):760 Pubmed >>
  • An evolutionarily acquired microRNA shapes development of mammalian cortical projections.
    Diaz JL, Siththanandan VB, Lu V, Gonzalez-Nava N, Pasquina L, MacDonald JL, Woodworth MB, Ozkan A, Nair R, He Z, Sahni V, Sarnow P, Palmer TD, Macklis JD, Tharin S
    Proc Natl Acad Sci U S A. 2020 Nov 02;: Pubmed >>
  • In vivo miRNA knockout screening identifies miR-190b as a novel tumor suppressor.
    Hong H, Yao S, Zhang Y, Ye Y, Li C, Hu L, Sun Y, Huang HY, Ji H
    PLoS Genet. 2020 Nov 02;16(11):e1009168 Pubmed >>
  • Ligation of 2', 3'-cyclic phosphate RNAs for the identification of microRNA binding sites.
    Berk C, Wang Y, Laski A, Tsagkris S, Hall J
    FEBS Lett. 2020 Oct 28;: Pubmed >>