All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: Aug. 11, 2020, 12:02 a.m.
Latest Literature
  • Salivary microRNA 155, 146a/b and 203: A pilot study for potentially non-invasive diagnostic biomarkers of periodontitis and diabetes mellitus.
    Al-Rawi NH, Al-Marzooq F, Al-Nuaimi AS, Hachim MY, Hamoudi R
    PLoS One. 2020;15(8):e0237004 Pubmed >>
  • Effective inhibition of cancer cells by recombinant adenovirus expressing EGFR-targeting artificial microRNA and reversed-caspase-3.
    Yan M, Chen J, Jiang H, Xie Y, Li C, Chen L, Yang B, Cao J
    PLoS One. 2020;15(8):e0237098 Pubmed >>
  • The molecular effect of a polymorphic microRNA binding site of Wolfram syndrome 1 gene in dogs.
    Koller D, Kubinyi E, Elek Z, Nemeth H, Miklosi A, Sasvari-Szekely M, Ronai Z
    BMC Genet. 2020 Jul 28;21(1):82 Pubmed >>
  • Integrative analysis of miRNA and mRNA sequencing data reveals potential regulatory mechanisms of ACE2 and TMPRSS2.
    Nersisyan S, Shkurnikov M, Turchinovich A, Knyazev E, Tonevitsky A
    PLoS One. 2020;15(7):e0235987 Pubmed >>
  • AEMDA: Inferring miRNA-disease associations based on deep autoencoder.
    Ji C, Gao Z, Ma X, Wu Q, Ni J, Zheng C
    Bioinformatics. 2020 Jul 29;: Pubmed >>
  • Inflammatory state of lymphatic vessels and miRNA profiles associated with relapse in ovarian cancer patients.
    Johnson SC, Chakraborty S, Drosou A, Cunnea P, Tzovaras D, Nixon K, Zawieja DC, Muthuchamy M, Fotopoulou C, Moore JE
    PLoS One. 2020;15(7):e0230092 Pubmed >>
  • The microRNA/TET3/REST axis is required for olfactory globose basal cell proliferation and male behavior.
    Yang D, Wu X, Zhou Y, Wang W, Wang Z
    EMBO Rep. 2020 Jul 17;:e49431 Pubmed >>
  • Upregulation of microRNA-451 attenuates myocardial I/R injury by suppressing HMGB1.
    Cao J, Da Y, Li H, Peng Y, Hu X
    PLoS One. 2020;15(7):e0235614 Pubmed >>
  • Determination of primary microRNA processing in clinical samples by targeted pri-miR-sequencing.
    Conrad T, Ntini E, Lang B, Cozzuto L, Andersen JB, Marquardt JU, Ponomarenko J, Tartaglia GG, Vang Orom UA
    RNA. 2020 Jul 15;: Pubmed >>
  • A novel serum miRNA-pair classifier for diagnosis of sarcoma.
    Jin Z, Liu S, Zhu P, Tang M, Wang Y, Tian Y, Li D, Zhu X, Yan D, Zhu Z
    PLoS One. 2020;15(7):e0236097 Pubmed >>
  • Impact of processing method on donated human breast milk microRNA content.
    Smyczynska U, Bartlomiejczyk MA, Stanczak MM, Sztromwasser P, Wesolowska A, Barbarska O, Pawlikowska E, Fendler W
    PLoS One. 2020;15(7):e0236126 Pubmed >>
  • microRNA-seq of cartilage reveals an over-abundance of miR-140-3p which contains functional isomiRs.
    Woods S, Charlton S, Cheung K, Hao Y, Soul J, Reynard LN, Crowe N, Swingler TE, Skelton AJ, Piróg KA, Miles CG, Tsompani D, Jackson RM, Dalmay T, Clark IM, Barter MJ, Young DA
    RNA. 2020 Jul 13;: Pubmed >>
  • Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo.
    Yang M, Woolfenden HC, Zhang Y, Fang X, Liu Q, Vigh ML, Cheema J, Yang X, Norris M, Yu S, Carbonell A, Brodersen P, Wang J, Ding Y
    Nucleic Acids Res. 2020 Jul 11;: Pubmed >>
  • SOD1 Suppression with Adeno-Associated Virus and MicroRNA in Familial ALS.
    Mueller C, Berry JD, McKenna-Yasek DM, Gernoux G, Owegi MA, Pothier LM, Douthwright CL, Gelevski D, Luppino SD, Blackwood M, Wightman NS, Oakley DH, Frosch MP, Flotte TR, Cudkowicz ME, Brown RH
    N Engl J Med. 2020 Jul 09;383(2):151-158 Pubmed >>
  • Starvation stress attenuates the miRNA-target interaction in suppressing breast cancer cell proliferation.
    Lü J, Zhang C, Han J, Xu Z, Li Y, Zhen L, Zhao Q, Guo Y, Wang Z, Bischof E, Yu Z
    BMC Cancer. 2020 Jul 06;20(1):627 Pubmed >>
  • MMiRNA-Viewer2, a bioinformatics tool for visualizing functional annotation for MiRNA and MRNA pairs in a network.
    Bai Y, Baker S, Exoo K, Dai X, Ding L, Khattak NA, Li H, Liu H, Liu X
    BMC Bioinformatics. 2020 Jul 06;21(Suppl 4):247 Pubmed >>
  • Structures of mammalian GLD-2 proteins reveal molecular basis of their functional diversity in mRNA and microRNA processing.
    Ma XY, Zhang H, Feng JX, Hu JL, Yu B, Luo L, Cao YL, Liao S, Wang J, Gao S
    Nucleic Acids Res. 2020 Jul 07;: Pubmed >>
  • Repression of tick microRNA-133 induces organic anion transporting polypeptide expression critical for Anaplasma phagocytophilum survival in the vector and transmission to the vertebrate host.
    Ramasamy E, Taank V, Anderson JF, Sultana H, Neelakanta G
    PLoS Genet. 2020 Jul;16(7):e1008856 Pubmed >>
  • Correction: Age-related transcriptional modules and TF-miRNA-mRNA interactions in neonatal and infant human thymus.
    PLOS ONE staff
    PLoS One. 2020;15(7):e0235767 Pubmed >>
  • The human box C/D snoRNA U3 is a miRNA source and miR-U3 regulates expression of sortin nexin 27.
    Lemus-Diaz N, Ferreira RR, Bohnsack KE, Gruber J, Bohnsack MT
    Nucleic Acids Res. 2020 Jul 01;: Pubmed >>