All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 205
Last update: Jan. 21, 2021, 12:02 a.m.
Latest Literature
  • Deciphering the miRNA transcriptome of breast muscle from the embryonic to post-hatching periods in chickens.
    Liu J, Li F, Hu X, Cao D, Liu W, Han H, Zhou Y, Lei Q
    BMC Genomics. 2021 Jan 19;22(1):64 Pubmed >>
  • Integrated analysis of mRNA and miRNA profiles revealed the role of miR-193 and miR-210 as potential regulatory biomarkers in different molecular subtypes of breast cancer.
    Evangelista AF, Oliveira RJ, O Silva VA, D C Vieira RA, Reis RM, C Marques MM
    BMC Cancer. 2021 Jan 18;21(1):76 Pubmed >>
  • Prognostic value of low microRNA-34a expression in human gastrointestinal cancer: a systematic review and meta-analysis.
    Chen YL, Liu XL, Li L
    BMC Cancer. 2021 Jan 14;21(1):63 Pubmed >>
  • A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms.
    Zhou L, Miller C, Miraglia LJ, Romero A, Mure LS, Panda S, Kay SA
    Proc Natl Acad Sci U S A. 2021 Jan 05;118(1): Pubmed >>
  • Integrated analysis of the responses of a circRNA-miRNA-mRNA ceRNA network to heat stress in rainbow trout (Oncorhynchus mykiss) liver.
    Quan J, Kang Y, Luo Z, Zhao G, Li L, Liu Z
    BMC Genomics. 2021 Jan 11;22(1):48 Pubmed >>
  • Identification of a novel six autophagy-related genes signature for the prognostic and a miRNA-related autophagy predictor for anti-PD-1 therapy responses in prostate cancer.
    Wu L, Quan W, Yue G, Luo Q, Peng D, Pan Y, Zhang G
    BMC Cancer. 2021 Jan 05;21(1):15 Pubmed >>
  • Widespread occurrence of microRNA-mediated target cleavage on membrane-bound polysomes.
    Yang X, You C, Wang X, Gao L, Mo B, Liu L, Chen X
    Genome Biol. 2021 Jan 05;22(1):15 Pubmed >>
  • Phase-related differences in egg production of the migratory locust regulated by differential oosorption through microRNA-34 targeting activinβ.
    Zhao L, Guo W, Jiang F, He J, Liu H, Song J, Yu D, Kang L
    PLoS Genet. 2021 Jan;17(1):e1009174 Pubmed >>
  • A pan-cancer atlas of somatic mutations in miRNA biogenesis genes.
    Galka-Marciniak P, Urbanek-Trzeciak MO, Nawrocka PM, Kozlowski P
    Nucleic Acids Res. 2021 Jan 06;: Pubmed >>
  • An efficient framework to identify key miRNA-mRNA regulatory modules in cancer.
    Mokhtaridoost M, Gönen M
    Bioinformatics. 2020 Dec 30;36(Supplement_2):i592-i600 Pubmed >>
  • MicroRNA-574 regulates FAM210A expression and influences pathological cardiac remodeling.
    Wu J, Venkata Subbaiah KC, Jiang F, Hedaya O, Mohan A, Yang T, Welle K, Ghaemmaghami S, Tang WHW, Small E, Yan C, Yao P
    EMBO Mol Med. 2020 Dec 28;:e12710 Pubmed >>
  • Noncoding but Coding: Pri-miRNA into the Action.
    Prasad A, Sharma N, Prasad M
    Trends Plant Sci. 2020 Dec 19;: Pubmed >>
  • Graph embedding ensemble methods based on the heterogeneous network for lncRNA-miRNA interaction prediction.
    Zhao C, Qiu Y, Zhou S, Liu S, Zhang W, Niu Y
    BMC Genomics. 2020 Dec 17;21(Suppl 13):867 Pubmed >>
  • Dysregulation of hepatic microRNA expression in C57BL/6 mice affected by excretory-secretory products of Fasciola gigantica.
    Shi W, He JJ, Mei XF, Lu KJ, Zeng ZX, Zhang YY, Sheng ZA, Elsheikha HM, Huang WY, Zhu XQ
    PLoS Negl Trop Dis. 2020 Dec 17;14(12):e0008951 Pubmed >>
  • miRNA expression profiling and zeatin dynamic changes in a new model system of in vivo indirect regeneration of tomato.
    Cao H, Zhang X, Ruan Y, Zhang L, Cui Z, Li X, Jia B
    PLoS One. 2020;15(12):e0237690 Pubmed >>
  • Retraction: MicroRNA-214 Suppresses Oncogenesis and Exerts Impact on Prognosis by Targeting PDRG1 in Bladder Cancer.
    PLOS ONE Editors
    PLoS One. 2020;15(12):e0244274 Pubmed >>
  • Ancient microRNA profiles of a 14,300-year-old canid samples confirm taxonomic origin and give glimpses into tissue-specific gene regulation from the Pleistocene.
    Fromm B, Tarbier M, Smith O, Marmol-Sanchez E, Dalen L, Gilbert TP, Friedlander MR
    RNA. 2020 Dec 15;: Pubmed >>
  • New computational model for miRNA-mediated repression reveals novel regulatory roles of miRNA bindings inside the coding region.
    Bergman S, Diament A, Tuller T
    Bioinformatics. 2020 Dec 15;: Pubmed >>
  • Validation of human microRNA target pathways enables evaluation of target prediction tools.
    Kern F, Krammes L, Danz K, Diener C, Kehl T, Küchler O, Fehlmann T, Kahraman M, Rheinheimer S, Aparicio-Puerta E, Wagner S, Ludwig N, Backes C, Lenhof HP, von Briesen H, Hart M, Keller A, Meese E
    Nucleic Acids Res. 2020 Dec 10;: Pubmed >>
  • Long non-coding RNA Peg13 attenuates the sevoflurane toxicity against neural stem cells by sponging microRNA-128-3p to preserve Sox13 expression.
    Jiang Y, Wang Y, Sun Y, Jiang H
    PLoS One. 2020;15(12):e0243644 Pubmed >>