All the tools you need to analyse your miRNAs


Sequencing Analysis Differential Expression Analysis Known miRNA Identification

miRNAkey is a software package designed to be used as a base-station for the analysis of miRNA deep sequencing data. It implements common steps taken in the analysis of such data, as well as adds unique features, such as data statistics and multiple mapping levels, generating a novel platform for the analysis of miRNA expression. The tabular and graphical output contains detailed reports on the sequence reads and provides an accurate picture of the differentially expressed miRNAs in paired samples.

Homepage: Link

Last Software Update: April 30, 2012
Publication Date: Aug. 27, 2010
Citations: 41 [via Pubmed]

Organism Specific:
  • any (from miRBase)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • differential expression

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Differential Expression Analysis
    Algorithm: Chi-Square algorithm
    miRNA differential expression:
    mRNA differential expression:
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:

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