All the tools you need to analyse your miRNAs


Novel miRNA/Precursor Prediction Sequencing Analysis Differential Expression Analysis Known miRNA Identification IsomiRs Identification

Analysis Scheme:
miRanalyzer – a web server and stand-alone tool for the detection of known and prediction of new microRNAs in high-throughput sequencing experiments.

Homepage: Link Offline

Last Software Update: Dec. 9, 2013
Publication Date: April 22, 2011
Citations: 138 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • rat
  • fly
  • worm
  • chicken
  • fish
  • other animals (selectable)
  • plants (selectable)

  • Reference Genome Needed: (online) / (local)
    Online/Local: /
    Installation/User Level: easy (online), advanced (local)
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • differential expression
  • precursor prediction
  • isomiRs identyfication
  • other ncRNA identification

  • Sequencing Platform Specific: Illumina, SOLiD
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • reads cluster analysis

  • Algorithm: Random-Forest
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Differential Expression Analysis
    Algorithm: DESeq
    miRNA differential expression:
    mRNA differential expression:
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:
    IsomiRs Identification
    NGS Data Needed:

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