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miR-PREFeR


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


MiR-PREFeR uses expression patterns of miRNA and follows the criteria for plant microRNA annotation to accurately predict plant miRNAs from one or more small RNA-Seq data samples of the same species.

Homepage: Link

Last Software Update: June 19, 2015
Publication Date: June 14, 2014
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 54 [via Pubmed]

Organism Specific:
  • plants

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPLv3
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification

    • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure

    • Algorithm: RNALfold
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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