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sPARTA


Target Prediction Sequencing Analysis


Analysis Scheme:
A powerful tool for plant miRNA target prediction and PARE validation. It can search for targets in unannotated genomic regions, which is useful to discover novel regulatory modules, independent of genome annotations that may be incomplete.

Homepage: Link

Last Software Update: June 30, 2015
Publication Date: Aug. 12, 2014
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 36 [via Pubmed]

Organism Specific:
  • plants

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Target Prediction
    Algorithm Features:
  • seed match
  • target-site abundance
  • G:U pairs allowed in the seed
  • degradome seq analysis

    • Target Region: any
    Target Annotation:
    Algorithm: miRferno
    NGS Data Needed:
    Metaserver:
    Sequencing Analysis
    Algorithm Features:
  • target prediction

    • Sequencing Platform Specific: Illumina
    PARE/CLIP-Seq: /





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