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MIREAP


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


MIREAP combines small RNA position and depth with a model of microRNA biogenesis to discover microRNAs from deeply sequenced small RNA library.

Homepage: Link

Last Software Update: March 27, 2013
Reference: [Journal]

Organism Specific:
  • any

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPL
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • precursor prediction

    • Sequencing Platform Specific: Illumina, 454, SOLiD
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • conservation

    • Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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