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CleaveLand4


Target Prediction Sequencing Analysis


Analysis Scheme:
CleaveLand a generalizable computational pipeline for the detection of cleaved miRNA targets from degradome data. CleaveLand takes as input degradome sequences, small RNAs and an mRNA database and outputs small RNA targets.

Homepage: Link

Last Software Update: March 21, 2014
Publication Date: Nov. 18, 2008
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 313 [via Pubmed]

Organism Specific:
  • any

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPLv3
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • G:U pairs allowed in the seed
  • degradome seq analysis

    • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:
    Sequencing Analysis
    Algorithm Features:
  • target prediction

    • Sequencing Platform Specific: Illumina
    PARE/CLIP-Seq: /





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