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miRA


Novel miRNA/Precursor Prediction Sequencing Analysis


miRA is a new tool to identify miRNA precursors in plants, allowing for heterogeneous and complex precursor populations. miRA requires small RNA sequencing data and a corresponding reference genome, and evaluates precursor secondary structures and precursor processing accuracy; key parameters can be adapted based on the specific organism under investigation.

Homepage: Link

Last Software Update: Aug. 21, 2015
Publication Date: Nov. 5, 2015
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 40 [via Pubmed]

Organism Specific:
  • plants

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 50-80%
    License: GPLv2
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • precursor prediction

    • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure
  • reads cluster analysis

    • Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:





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