Target Prediction Meta-Server - Job Status

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Job UUID: eee0dfe6-ec40-48ae-9c0f-1bae4cd49fed
Name: Sample Results2
Description: Sample Results2
Job link:
Submission date: 2015-12-30 13:31:20
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Custom parameters

  • rnahybrid
    • -e: "-17", Energy threshold
    • -f: "2,8", Helix constraint
    • -v: "0", Maximal bulge loop size
  • guugle
    • -d: "15", Output only matches with length of at least x
  • targetalign
    • -maxmismatches: "4", Maximum number of mismatches
    • -sc: "45", Score threshold
    • -noMismatchesStart: "10", Start site with no mismatches
    • -maxGU: "6", Maximum number of G:U wobbles
    • -noMismatchesEnd: "11", End site with no mismatches
    • -maxConMismatches: "2", Maximum number of consecutive mismatches
    • -allowGU: "T", Allow G:U? [T/F]
    • -maxGap: "4", Maximum number of gaps
  • psrobot
    • -fp: "2", 5 prime boundary of essential sequence (1-2)
    • -ts: "2.5", Target penalty score, lower is better (0-5)
    • -tp: "17", 3 prime boundary of essential sequence (7-31)
    • -gn: "1", Number of gaps/bulges permitted (0-5)
    • -gl: "17", Position after which gap/bulge is permitted (0-30), 0 means no gap/bulge permitted
  • miranda
    • -en: "1.0", Energy threshold (-E kcal/mol)
    • -sc: "140.0", Score threshold

  • Basic and Extended are two different analysis modes. Basic mode denotes unique pairs of mRNA and miRNA, while Extended mode treats triplets (miRNA, mRNA, and position in given mRNA) unique.
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    Download Table
    CSV XLS XLSX
    # mRNA miRNA Number of
    Binding Sites
    rnahybrid miranda targetalign psrobot guugle Total Number
    of Tools